MmuEX0014960 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:117903102-117914633:-
Coord C1 exon
chr12:117914506-117914633
Coord A exon
chr12:117911018-117911245
Coord C2 exon
chr12:117903102-117903293
Length
228 bp
Sequences
Splice sites
3' ss Seq
CAAGCCCTGATGTCTTGCAGAAT
3' ss Score
6.73
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCAAAAGGCTGGGGTTTACGATTGACTCTGGAAAATTCCACAATGTGTCTCTAGGGCAAGGTCAGGAACTAGTGGCGGAAATGGCAATGGAGAAAGCTGCCGCTGGAGGACACTGGGTCATCCTTCAG
Seq A exon
AATGTTCATCTGGTAGCCAAATGGCTGGGAACTCTGGAGAAACTCCTTGAAAAATTCAGTCAAGGAAGCCACAGAGATTACAGGGTGTTCCTGAGTGCTGAGACTGTACCTTCCCAACATGAGCCCATAATCCCTCAAGGCCTCCTGGAAAATTCCATTAAGATCACTAACGAGCCCCCCACGGGAATGCTGGCCAACCTACATGCTGCTTTGTACAACTTTGACCAG
Seq C2 exon
GATACACTTGAGATGTGTTCCAAAGATCAGGAGTTTAAAAGCATCCTCTTCTCTCTGTGCTACTTCCATGCCTGTGTGGCAGGGAGACTGAGGTTCGGTCCCCAGGGCTGGAGCCGAAGCTATCCTTTCAGTCCTGGAGACCTGACTATCTGCACCAACATCCTCTACAACTACTTAGAGGCAAACCCGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'99-97,'99-95,100-97
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAGGCTGGGGTTTACGA
R:
TGTAGAGGATGTTGGTGCAGA
Band lengths:
297-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types