RnoEX0028432 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145806443-145816857:-
Coord C1 exon
chr6:145816730-145816857
Coord A exon
chr6:145812516-145812743
Coord C2 exon
chr6:145806443-145806634
Length
228 bp
Sequences
Splice sites
3' ss Seq
ACAGCCCTGCTGTCTTGCAGAAT
3' ss Score
8.72
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCAAAAGGCTGGGATTTACGATTGACTCTGGAAAATTCCACAATGTGTCTCTAGGGCAAGGTCAGGAACTAGTGGCAGAAATGGCGCTGGAGAAAGCAGCCATTGGAGGACACTGGGTCTTCCTTCAG
Seq A exon
AATGTTCATCTGGTAGCCAAATGGCTGGGAACCTTGGAGAAACTCCTTGAAAAGTTCAGTCAAGGAAGCCACAGGGATTACAGGGTGTTCCTGAGTGCCGAGGCTGCACCTTCCCAACACGAGCCTGTCATCCCTCAAGGCCTCCTGGAAAATTCCATTAAGATCACCAACGAGCCCCCCACAGGAATGCTGGCCAACCTGCATGCTGCTCTATACAACTTTGACCAG
Seq C2 exon
GATACGCTCGAGATGTGCTCCAAGGATCAGGAGTTTAAAAGCATCCTCTTCTCCCTGTGTTACTTCCATGGCTGCGTGGCAGGGAGACTGAGGTTTGGTCCCCAGGGCTGGAGCCGAAGCTATCCTTTCAGCCCGGGAGACCTGACCATCTGCACCAACATCCTCTACAACCACTTAGAGGCAAACCCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'95-99,'95-97,97-99
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAAGGCTGGGATTTACGA
R:
AGGATGTTGGTGCAGATGGTC
Band lengths:
292-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]