DreEX6040425 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19397140-19399549:-
Coord C1 exon
chr16:19399422-19399549
Coord A exon
chr16:19397698-19397925
Coord C2 exon
chr16:19397140-19397331
Length
228 bp
Sequences
Splice sites
3' ss Seq
AACTGACTTCTCTGTTTCAGAAT
3' ss Score
9.61
5' ss Seq
AAGGTCTTT
5' ss Score
2.08
Exon sequences
Seq C1 exon
GGCTGAAGCTTGGCTTTACCACAGACAGAGGGAACTTCCATAATGTGTCCTTAGGTCAAGGACAAGAAACTGTAGCTGAAATAGCGTTGGAGACCGCAGCTAAAAATGGACATTGGGTCATGCTGCAG
Seq A exon
AATATCCACCTGCTATCACAGTGGTTGAGTCGTCTGGAGGAGATGTTGGAGAACACGGCTAGCAATGCTCACTCAAACTACAGAGTGTTCATGAGTGGAGAACCAGCTCCCAATCCACATGAGCATCTAATCCCTCGCACCATCCTGGAGAACTCTCTCAAACTCACCACTGAACCCCCAACTGGCATGAACTCTACCTTACATGCTGCTCTGGACAACTTCAGCAAG
Seq C2 exon
GATACTCTGGAAATGTGTTCTCGAGAGCAGGAGTTTAAAGGACTCATGTTCTCGCTGTGTTACTTCCATGCCTGTGTGAGTGAGAGGCGGAAGTTTGGACCTCAGGGTTGGAACCACAAATACCCATTCAACAATGGAGATCTGAATATTTCAGCTAATGTTCTGTACAACTACCTGGAGGCCAGTACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'50-56,'50-55,51-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.224 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTACCACAGACAGAGGG
R:
TGGCCTCCAGGTAGTTGTACA
Band lengths:
301-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]