BtaEX6026590 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30760225-30772388:+
Coord C1 exon
chr4:30760225-30760352
Coord A exon
chr4:30766783-30767010
Coord C2 exon
chr4:30772197-30772388
Length
228 bp
Sequences
Splice sites
3' ss Seq
TAAACCATGCTCTTTTTCAGAAT
3' ss Score
7.46
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCAAAAGACTGGGCTTTACGATCGACTCTGGAAAATTCCACAACGTGTCTTTAGGACAAGGGCAGGAGATGGTGGCAGAAACGGCCCTGGAGAAGGCTTCCAGAGAAGGACACTGGGTCATACTCCAG
Seq A exon
AATGTCCATTTGGTAGCCAAGTGGCTGAGAACCTTGGAGAAACTGCTTGAAAGATTCAGCCAGGGAAGCCACCGAGATTACAGGGTTTTCATGAGTGCTGAGTCTGCATCTATACCCAGCGAGCATGTCATCCCTCAGGGGCTCCTGGAGAATTCCATCAAGATCACTAACGAGCCCCCCACAGGGATGCTGGCCAATCTGCATGCTGCTCTCTACAATTTTGATCAG
Seq C2 exon
GATACACTTGAAGTGTGCTCCAAGGAGCAGGAGTTTAAAAGCATCCTCTTCTCTCTGTGCTACTTCCATGCCTGTGTTGCCGGGAGGCTGAGGTTTGGCCCCCAGGGCTGGAGCCGCCGCTACCCGTTCAGTCCCGGGGACCTCACCATCTGTGCCAGCGTCCTCTACAACTACTTAGAGGCAAACCCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'88-96,'88-95,91-96=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(21.3=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=FE(8.9=100)
Main Skipping Isoform:
ENSBTAT00000061103fB2190
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTTACGATCGACTCTGG
R:
GTAGTTGTAGAGGACGCTGGC
Band lengths:
292-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]