GgaEX6019214 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:30568949-30574043:+
Coord C1 exon
chr2:30568949-30568993
Coord A exon
chr2:30571276-30571506
Coord C2 exon
chr2:30573959-30574043
Length
231 bp
Sequences
Splice sites
3' ss Seq
TCCTATTGGTTGTTTTCCAGCAG
3' ss Score
7.15
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGACTTGATAAGGCTGCCAAGTATGGCCACTGGCTTCTTCTCCAA
Seq A exon
CAGAATATTCGTGTGGCAGCCAAGTGGCTAGGAACCTTGGAAAAACTCCTTGAGCAATACAGTGAAGAAAGCCACTCTGACTTCCATGTCTTCATTAGTACTGAACCAGCTCCAGGCCCAGAAGAGCACGTCGTTCTTCAAGGAATACTTGAAGACTGGATTACAATTACCAGAGGAGCTCCTACAAGGACGCTAGCTAATCTATGTGCTGCCCTCCACAGTTTTGATCAG
Seq C2 exon
GATAACCTTGAACTGTGTGGCAAAGAACAGGAGTTTAAGAGCATCCTTTTCTCTCTTCGTGATTTTCACACTCATGTTGCCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010906-'4-5,'4-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.1=100)
A:
PF0302810=Dynein_heavy=FE(27.4=100)
C2:
PF0302810=Dynein_heavy=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]