RnoEX0028495 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107039890-107043029:-
Coord C1 exon
chr10:107042902-107043029
Coord A exon
chr10:107042282-107042509
Coord C2 exon
chr10:107039890-107040081
Length
228 bp
Sequences
Splice sites
3' ss Seq
CACAGGAATCCTTGCCGCAGAAC
3' ss Score
4.13
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGAAAAAACTGGGATTTACCATAGACAATGGGAAACTCCATAACGTGTCCCTGGGGCAAGGACAAGAGGTGGTGGCCGAGGATGCGCTGGACGTGGCTGCCGAGAAAGGACACTGGGTCATTCTGCAG
Seq A exon
AACATTCACCTGGTGGCGAGATGGCTGAGTATCCTGGACAAGAAGGTGGAACGCTACAGCTCAGGTAGCCACGAGGACTACCGGGTGTTCATCAGCGCAGAGCCTGCTCCCTCCGTGGAGACACACATCATCCCCCAGGGCATCCTGGAAAACGCCATCAAAATCACCAACGAGCCTCCCACGGGCATGTATGCCAACCTGCACAAGGCGCTGGACCTTTTCACTCAG
Seq C2 exon
GACACCCTGGAGATGTGCACCAAGGAGATTGAGTTCAAGTGCATCCTCTTCGCCTTGTGCTACTTCCACGCCGTGGTCGCCGAGAGGCGCAAGTTTGGTGCCCAGGGCTGGAACCGGTCGTACCCCTTCAACAATGGGGACCTCACCATCTCCATCAACGTGCTCTACAATTACCTGGAAGCCAACCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.9=100)
A:
PF0302810=Dynein_heavy=FE(10.8=100)
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAACTCCATAACGTGTCC
R:
CTTGGGGTTGGCTTCCAGGTA
Band lengths:
292-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]