GgaEX6017118 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF56]
Coordinates
chr19:4171549-4172074:-
Coord C1 exon
chr19:4171983-4172074
Coord A exon
chr19:4171784-4171907
Coord C2 exon
chr19:4171549-4171702
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCCGTGTTCCTACAGGCG
3' ss Score
11.08
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGGTGGTCAGCGTGCAGGGGCTGCAGGCAGCCGGGCACCAGGAGGGCTGGTTCAGGCTGCAGCCGGACACGGCCAAGCCCAGGGAGGATAG
Seq A exon
GCGCCGGGGCAGCCTGGGCTCACTGCAGCTGCAAGTGAGGCTGCGGGATGAGACAGTGCTGCCCTCCCACTGCTACCAGCCCTTGGTCCAGCTGCTGTGCCAGGAGGTGAAGGCAGGGCACCAG
Seq C2 exon
GCCGGCGGGGTGCACCTGGTCACCCTCCTCGATGAAACCACCACGGCTGAGAGCCGGCAGGACGTCGCCGTCAACCTGGTGAAACTCTTCTTGGGCCAAGGGCTGGTGAAGGAGTTTCTGGACCTGCTCTTTGAACTGGAGCTGGCCAAGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876-'10-11,'10-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(1.2=3.2)
A:
NO
C2:
PF0061614=RasGAP=PU(6.9=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGTCAGCGTGCAG
R:
CTTGGCCAGCTCCAGTTCAAA
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]