MmuEX0038889 @ mm9
Exon Skipping
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136574558-136577559:+
Coord C1 exon
chr5:136574558-136574649
Coord A exon
chr5:136576772-136576889
Coord C2 exon
chr5:136577495-136577559
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCACAAGCTGCCCATTGCAGGGG
3' ss Score
4.38
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGGCGGTCAATGTCCAGAGACTTTGTTCAGCCCAGCAGGAAGAGGGCTGGTTCCGGCTGCAGCCTGACCAGTCCAAAAGCCGTCAAGGCAA
Seq A exon
GGGCAACCTGGGCTCCTTGCAGTTGGAAGTGCGGCTGCGGGACGAGACAGTGCTGCCGTCCGTCTGCTACCAGCCCCTGGTACAACTGTTGTGCCAGGAGGTGAAGCTGGGCACTCAG
Seq C2 exon
GTGAAGCCAACACCCTCTTCCGGAGCAATTCTCTGGCCTCAAAGTCCATGGAGTCTTTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952_MULTIEX2-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(1.2=3.2)
A:
NO
C2:
PF0061614=RasGAP=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCGGTCAATGTCCAGAG
R:
AGACTCCATGGACTTTGAGGC
Band lengths:
148-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: