GgaEX6018292 @ galGal3
Exon Skipping
Gene
ENSGALG00000006072 | E1BXV5_CHICK
Description
NA
Coordinates
chr2:5319350-5321946:+
Coord C1 exon
chr2:5319350-5319403
Coord A exon
chr2:5321126-5321263
Coord C2 exon
chr2:5321842-5321946
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTTTCATTCCTGCAGAAA
3' ss Score
10.15
5' ss Seq
AAGATAAGT
5' ss Score
2.82
Exon sequences
Seq C1 exon
GCAACATTTAAGGGTTGGATGGAGATCATGTATGCAGCAGTAGACTCACGAGAG
Seq A exon
AAAGATGAACAGCCGAAAATGGAGTACAATTTATTTATGTATCTCTACTTCGTGAACTTCATCATCTTTGGATCTTTCTTTACCCTGAATCTCTTTGTTGGTGTTATTATAGACAATTTCAACCAACAAAAGAAAAAG
Seq C2 exon
CTTGGTGGGGAAGATATATTTATGACAGAGGAGCAGAAAAAATATTACAACGCCATGAAAAGGTTGGGATCCAAGAAACCTCAAAAACCCATTCCAAGACCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006072-'35-37,'35-36,36-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.6=100)
A:
PF0052026=Ion_trans=PD(15.7=76.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACATTTAAGGGTTGGATGGA
R:
GGTCTTGGAATGGGTTTTTGAGG
Band lengths:
155-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]