RnoEX6038223 @ rn6
Exon Skipping
Gene
ENSRNOG00000032473 | Scn10a
Description
sodium voltage-gated channel alpha subunit 10 [Source:RGD Symbol;Acc:3629]
Coordinates
chr8:128307671-128309760:-
Coord C1 exon
chr8:128309707-128309760
Coord A exon
chr8:128308617-128308754
Coord C2 exon
chr8:128307671-128307775
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCCGTTTTGTGTAACCACAGATC
3' ss Score
7.95
5' ss Seq
AAGATAAGT
5' ss Score
2.82
Exon sequences
Seq C1 exon
GCAACCTTCAAAGGCTGGATGGACATAATGTATGCAGCTGTTGATTCCGGAGAG
Seq A exon
ATCAACAGTCAGCCTAACTGGGAGAACAACTTGTACATGTACCTGTACTTCGTCGTTTTCATCATTTTCGGTGGCTTCTTCACGCTGAATCTCTTTGTTGGGGTCATAATCGACAACTTCAACCAACAGAAAAAAAAG
Seq C2 exon
CTAGGAGGCCAGGACATCTTCATGACAGAAGAGCAGAAGAAGTACTACAATGCCATGAAGAAGCTGGGCTCCAAGAAACCCCAGAAGCCCATCCCACGGCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032473-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.4=100)
A:
PF0052026=Ion_trans=PD(15.2=76.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAAAGGCTGGATGGACA
R:
TGGGATGGGCTTCTGGGG
Band lengths:
146-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]