BtaEX6093463 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046911 | SCN10A
Description
sodium channel, voltage gated, type X alpha subunit [Source:HGNC Symbol;Acc:HGNC:10582]
Coordinates
chr22:12155344-12156742:-
Coord C1 exon
chr22:12156689-12156742
Coord A exon
chr22:12155703-12155840
Coord C2 exon
chr22:12155344-12155448
Length
138 bp
Sequences
Splice sites
3' ss Seq
CACCACTTGTCTGCTCACAGGTG
3' ss Score
9.05
5' ss Seq
AAGATAAGT
5' ss Score
2.82
Exon sequences
Seq C1 exon
GCAACCTTTAAAGGCTGGATGGACATCATGTATGCGGCTGTCGATTCCCGGGAT
Seq A exon
GTGAACCTGCAGCCCAAGTGGGAGGACAACGTGTACATGTACTTTTACTTTGTCATCTTCATCATTTTTGGCGGCTTCTTCACACTCAATCTCTTTGTTGGCGTCATCATTGACAACTTCAACCAACAGAAAAAAAAG
Seq C2 exon
TTAGGGGGCCAGGACATCTTCATGACAGAGGAGCAGAAGAAATACTACAACGCCATGAAGAAGCTGGGCTCCAAGAAGCCCCAGAAGCCCATCCCACGGCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046911-'27-25,'27-24,28-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.4=100)
A:
PF0052026=Ion_trans=PD(15.2=76.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTAAAGGCTGGATGGACA
R:
TGGGATGGGCTTCTGGGG
Band lengths:
146-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]