HsaEX6055182 @ hg19
Exon Skipping
Gene
ENSG00000185313 | SCN10A
Description
sodium channel, voltage-gated, type X, alpha subunit [Source:HGNC Symbol;Acc:10582]
Coordinates
chr3:38748770-38752388:-
Coord C1 exon
chr3:38752335-38752388
Coord A exon
chr3:38750969-38751106
Coord C2 exon
chr3:38748770-38748874
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTTGTCTGGTCACAGGTC
3' ss Score
9.75
5' ss Seq
AAGATAAGT
5' ss Score
2.82
Exon sequences
Seq C1 exon
GCAACCTTTAAAGGCTGGATGGACATTATGTATGCAGCTGTTGATTCCCGGGAG
Seq A exon
GTCAACATGCAACCCAAGTGGGAGGACAACGTGTACATGTATTTGTACTTTGTCATCTTCATCATTTTTGGAGGCTTCTTCACACTGAATCTCTTTGTTGGGGTCATAATTGACAACTTCAATCAACAGAAAAAAAAG
Seq C2 exon
TTAGGGGGCCAGGACATCTTCATGACAGAGGAGCAGAAGAAATACTACAATGCCATGAAGAAGTTGGGCTCCAAGAAGCCCCAGAAGCCCATCCCACGGCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185313-'22-23,'22-22,23-23=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.4=100)
A:
PF0052026=Ion_trans=PD(15.2=76.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTAAAGGCTGGATGGACA
R:
TGGGATGGGCTTCTGGGG
Band lengths:
146-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)