DreEX6067603 @ danRer10
Exon Skipping
Gene
ENSDARG00000098738 | scn4aa
Description
sodium channel, voltage-gated, type IV, alpha, a [Source:ZFIN;Acc:ZDB-GENE-051201-2]
Coordinates
chr12:4855093-4856092:+
Coord C1 exon
chr12:4855093-4855146
Coord A exon
chr12:4855745-4855882
Coord C2 exon
chr12:4855988-4856092
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTAATTATTTTCTTTGACAGGTG
3' ss Score
10.55
5' ss Seq
AAGATAAGC
5' ss Score
2.04
Exon sequences
Seq C1 exon
GCCACATTCAAAGGCTGGATGGATATCATGTATGCTGCAGTGGATTCTAGAGAG
Seq A exon
GTGGATGAGCAGCCATCATATGAAATCAACCTTTACATGTACCTTTATTTTGTTATTTTCATCATTTTTGGCTCCTTTTTTACTCTCAACCTCTTTATTGGTGTCATCATTGACAACTTCAATCAGCAAAAATCAAAG
Seq C2 exon
TTTGGAGGGAAAGACATTTTCATGACTGAGGAACAGAAAAAGTATTACAATGCCATGAAGAAGCTGGGTGCAAAGAAACGTCCAAAACCTATACCTCGACCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098738-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.5=100)
A:
PF0052026=Ion_trans=PD(15.4=76.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACATTCAAAGGCTGGATG
R:
GGTCGAGGTATAGGTTTTGGACG
Band lengths:
155-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]