RnoEX6050166 @ rn6
Exon Skipping
Gene
ENSRNOG00000012134 | Scn4a
Description
sodium voltage-gated channel alpha subunit 4 [Source:RGD Symbol;Acc:3636]
Coordinates
chr10:94510146-94511485:-
Coord C1 exon
chr10:94511432-94511485
Coord A exon
chr10:94511092-94511229
Coord C2 exon
chr10:94510146-94510250
Length
138 bp
Sequences
Splice sites
3' ss Seq
GTGGGTACCTCACCCTGCAGAAA
3' ss Score
6.49
5' ss Seq
AAGATGAGT
5' ss Score
2.29
Exon sequences
Seq C1 exon
GCCACATTCAAGGGTTGGATGGATATCATGTATGCAGCTGTGGACTCCCGGGAG
Seq A exon
AAAGAGGAGCAGCCAGACTATGAGGTGAACCTCTACATGTACCTCTACTTCGTCATCTTCATCATCTTCGGCTCCTTCTTCACCCTCAACCTCTTCATCGGTGTCATCATCGACAACTTCAACCAACAGAAGAAGAAG
Seq C2 exon
TTTGGAGGGAAAGACATCTTCATGACAGAGGAACAGAAGAAATACTACAACGCGATGAAGAAGCTTGGCTCCAAGAAGCCCCAGAAGCCAATTCCCCGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012134-'30-26,'30-25,32-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.5=100)
A:
PF0052026=Ion_trans=PD(15.4=76.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACATTCAAGGGTTGGAT
R:
CTGAGGCCGGGGAATTGG
Band lengths:
159-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]