GgaEX6027199 @ galGal4
Exon Skipping
Gene
ENSGALG00000000252 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr27:1632648-1633764:-
Coord C1 exon
chr27:1633711-1633764
Coord A exon
chr27:1632974-1633111
Coord C2 exon
chr27:1632648-1632752
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTCCCATCTCACCCAATCAGATT
3' ss Score
7.3
5' ss Seq
AAGATAAGT
5' ss Score
2.82
Exon sequences
Seq C1 exon
GCGACCTTCAAAGGTTGGATGGACATCATGTACGCTGCTGTGGACTCACGTGAG
Seq A exon
ATTGAAGAGCAGCCAGTGTACGAGATCAACCTCTACATGTACATCTACTTTGTCATCTTCATCATCTTTGGAGCTTTCTTCACCCTCAACCTCTTCATCGGTGTCATCATTGACAACTTCAACCAGCAGAAGAAAAAG
Seq C2 exon
TTTGGAGGCAAAGACATCTTCATGACAGAAGAGCAGAAGAAATACTATAATGCCATGAAGAAGCTCGGCTCCAAGAAACCCCAGAAGCCCATCCCCAGGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.5=100)
A:
PF0052026=Ion_trans=PD(15.4=76.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAAAGGTTGGATGGACA
R:
TGGGGATGGGCTTCTGGG
Band lengths:
147-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]