GgaEX6027199 @ galGal3
Exon Skipping
Gene
ENSGALG00000000252 | Q8AV15_CHICK
Description
NA
Coordinates
chr27:1538958-1540074:-
Coord C1 exon
chr27:1540021-1540074
Coord A exon
chr27:1539284-1539421
Coord C2 exon
chr27:1538958-1539062
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTCCCATCTCACCCAATCAGATT
3' ss Score
7.3
5' ss Seq
AAGATAAGT
5' ss Score
2.82
Exon sequences
Seq C1 exon
GCGACCTTCAAAGGTTGGATGGACATCATGTACGCTGCTGTGGACTCACGTGAG
Seq A exon
ATTGAAGAGCAGCCAGTGTACGAGATCAACCTCTACATGTACATCTACTTTGTCATCTTCATCATCTTTGGAGCTTTCTTCACCCTCAACCTCTTCATCGGTGTCATCATTGACAACTTCAACCAGCAGAAGAAAAAG
Seq C2 exon
TTTGGAGGCAAAGACATCTTCATGACAGAAGAGCAGAAGAAATACTATAATGCCATGAAGAAGCTCGGCTCCAAGAAACCCCAGAAGCCCATCCCCAGGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(31.5=94.4),PF116463=DUF3258=PU(16.0=72.2)
A:
PF0052026=Ion_trans=PD(15.4=76.1)
C2:
PF116463=DUF3258=PD(23.5=57.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAAAGGTTGGATGGACA
R:
TGGGGATGGGCTTCTGGG
Band lengths:
147-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]