GgaEX6021367 @ galGal3
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106330784-106334464:+
Coord C1 exon
chr2:106330784-106330935
Coord A exon
chr2:106332319-106332479
Coord C2 exon
chr2:106334356-106334464
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCCAATGTTGCTTGACCTAGGTC
3' ss Score
7.24
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTGCTTGCTCTATCAGCATTTGCCATTGGGCAAATTTTCCTGTGTCCTTGCTTCAGAGGCAGTGTATTTCAGGCACGGTGTAAAACACGGAATACCTGTCCGACAGCCATCTCCTGGTCAACCAGTGATGTCACATATCAGTGGAAGAGAG
Seq A exon
GTCAATTTACAGATGACCATAAATGTTCCTCATGTTGGTCGCTATGTTCTTGTTTTTGAATACACCAATGAAGATGACCAGTTATACACTGCTGAGGTAACAGTAAATAGCCCTGGACCTGTCACAGAAGGTAGAGTGAGAATATACAGTTGCAAATACAG
Seq C2 exon
TTTCCTTTGTCGTAGTGTTGTCGTTGATGATAGGAATCGCATTGCAGCTTATGACCTTCTAGCAGATACAAAGGTACATCTTCAGGCATCATCAATTAATTTTCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'26-28,'26-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTATCAGCATTTGCCATTGGG
R:
TAATTGATGATGCCTGAAGATGTACC
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]