RnoEX6058085 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3815544-3823593:+
Coord C1 exon
chr18:3815544-3815697
Coord A exon
chr18:3820849-3821009
Coord C2 exon
chr18:3823485-3823593
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTCCTTGCCCTCTCTGGCAGGTG
3' ss Score
10.9
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
TTGTTTGCTTTACCAGCATTTACCACTGACCCGATTCTCCTGTACCCTGGCTTGTGAGGCCACACACTTCCTGATTGATGGAGAGCGGAGACCCTTGGCAGTGAGGCAGCCCATGCCCACACACCCAGCCATGGTGGACCTCAGTGGGACAGAG
Seq A exon
GTGGAATTGCACCTACGTCTGCGGGTCCCACAGATTGGCCACTATGTGGTCATGTTGGAGTATGCCACGGAGGTGGACCAGCTTTTTGTGGTGGACGTGAATCTGAAGAGCCCAGAGTCTGCCTTGGCAGGCCAGGTGAACATATACAGCTGCAAGTACAG
Seq C2 exon
CATTCTGTGCAGGAGTGTGGTGATTGACAGCCTGAGTCGTACAGCTGTGTATGAGCTGTTGGCAGATGCAGACGTTCAGCTCAAGGTGCACGCGGCCCGTTTCCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300-'28-27,'28-26,30-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000092846fB93
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCATTTACCACTGACCCG
R:
CAGAAGGAAACGGGCCGC
Band lengths:
251-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]