MmuEX6000324 @ mm10
Exon Skipping
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12462685-12468360:+
Coord C1 exon
chr18:12462685-12462838
Coord A exon
chr18:12465361-12465521
Coord C2 exon
chr18:12468252-12468360
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTACTTGTCCTCTCTGGCAGGTA
3' ss Score
10.61
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
CTGTTTGCTTTACCAGCATTTACCACTGACTGCATTCTCCTGTACCCTGGCTTGTGAGGCCAGACACTTCCTGCTGGATGGAGAGCTGAGACCCTTGGCAATGAGGCAGCCCACACCCACACACCCAGCCATGGTGGACCTCAGCGGGAGAGAG
Seq A exon
GTAGAACTGCAGCTTCGTCTGCGGGTCCCACAGGTTGGCCACTACGTGGTCCTGCTGGAGTATGCCACGGAGGTGGAGCAGCTTTTTGTGGTGGACGTGAATCTGAAGAGCTCAGGGTCTGCCTTGGCAGGCCAGGTGAACATATACAGCTGCAAGTACAG
Seq C2 exon
CATCCCGTGCAGGAGTGTGGTGATTGACAGCCTGAGTCGCACGGCTGTACATGAGCTGTTGGCAGATGCAGACATTCAGCTCAAGGCGCACATGGCCCATTTCCTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCATTTACCACTGACTGCA
R:
AAAAGGAAATGGGCCATGTGC
Band lengths:
250-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types