GgaEX6022115 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139129871-139136324:-
Coord C1 exon
chr2:139136133-139136324
Coord A exon
chr2:139132922-139133060
Coord C2 exon
chr2:139129871-139130058
Length
139 bp
Sequences
Splice sites
3' ss Seq
CAATTTATTTTTATTCACAGCTC
3' ss Score
7.27
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTTCTGTAGCTACTGCCTGCCGTGATCCTGGTGTCCCCATGAATGGAACTAGAAATGGGGATGGAAGAGAACCCGGAGACACTGTGATTTTTCAGTGTGACCCTGGATATGAATTGCAAGGAGATGAGAGGATAACCTGCATTCAGGTAGAAAATCGGTACTTCTGGCAGCCCAACCCACCAGTCTGCATAG
Seq A exon
CTCCCTGTGGAGGAAACCTGACTGGCTCATCAGGTTTTATACTTTCACCAAACTTCCCACATCCTTATCCCCACAGCCGAGATTGTGACTGGACTATCACTGTTAATAATGACTATGTTATATCACTAGCATTTATCAG
Seq C2 exon
TTTCAGTATAGAACCAAATTATGATTTTCTTTATATTTATGATGGACCAGACAGTAACAGCCCACTGATTGGGAGCTTTCAAGATAGCAAGCTTCCAGAGAGGATAGAAAGCAGTTCAAATAACATGCATCTGGCTTTTCGGAGTGATGGATCTGTTAGTTTCACAGGATTCCACCTGGAGTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.7)
A:
PF0043115=CUB=PU(41.5=93.6)
C2:
PF0043115=CUB=PD(57.5=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGTAGCTACTGCCTGCC
R:
AGTGGGCTGTTACTGTCTGGT
Band lengths:
258-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]