MmuEX6053509 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47847107-47857981:-
Coord C1 exon
chr15:47857790-47857981
Coord A exon
chr15:47849682-47849820
Coord C2 exon
chr15:47847107-47847294
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTGTTTAAATTAAAGCAC
3' ss Score
3.73
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTCAGTTGCAACTGCCTGTCGTGATCCAGGAGTCCCCATGAATGGGACACGGAATGGTGACGGACGAGAACCTGGGGACACTGTTGTCTTTCAGTGTGATCCTGGATATGAGCTTCAAGGACAAGAAAGAATAACCTGCATTCAGGTAGAAAATCGATACTTCTGGCAGCCCAGCCCACCAGTCTGTATAG
Seq A exon
CACCTTGTGGAGGCAATTTAACAGGATCTTCAGGCTTTATCCTTTCGCCAAACTTCCCTCATCCATACCCACACAGCAGGGACTGTGATTGGACCATCAGTGTCAATACGGACTATGTTATCTCCTTGGCCTTTATCAG
Seq C2 exon
TTTTAGCATAGAACCAAACTATGACTTCCTCTACATATATGATGGCCCAGACAGTAATAGTCCATTGATTGGAAGTTTTCAAGACAGCAAGTTACCAGAAAGAATAGAGAGCAGCTCGAATACCATGCACTTGGCTTTTCGGAGTGATGGATCTGTCAGTTACACCGGATTTCATTTAGAGTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'75-43,'75-42,76-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.7)
A:
PF0043115=CUB=PU(41.5=93.6)
C2:
PF0043115=CUB=PD(57.5=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCTGGGGACACTGTTGT
R:
GTGCATGGTATTCGAGCTGCT
Band lengths:
255-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types