GgaEX6022728 @ galGal3
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2587853-2594079:-
Coord C1 exon
chr20:2593903-2594079
Coord A exon
chr20:2588157-2588212
Coord C2 exon
chr20:2587853-2588090
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTGCTGCCTGTTCTCGCAAGGAA
3' ss Score
5.12
5' ss Seq
TGCCCATGC
5' ss Score
-14.4
Exon sequences
Seq C1 exon
GTTAAAAACCTGATTGAGGAGATGGCTGCTCTGGATGAGATTATTGCCAAGCTGACAAAAGAGAAGAAAGCACTACAAGAGGCCCATCAACAGGCCCTGGATGACTTGCAGGCTGAGGAAGATAAAGTCAACACGCTGACCAAAGCCAAGGTCAAACTGGAACAGCAAGTGGATGAC
Seq A exon
GAAGAAAGCTGGCCATTCGGGCTGCAGAAGGCGGAAAGAGGCCTGTGGAAGGCTGC
Seq C2 exon
CTCTCAGTGGACCTGGAGAGAGCCAACTCTGCCTGTGCTGCCCTGGACAAGAAGCAGCGCAACTTTGACAGGATCCTGGCTGAGTGGAAGCAGAAGTATGAGGAAACTCAGGCAGAGCTGGAGGCATCACAGAAAGAGTCACGCAGCCTGAGCACGGAACTCTTCAAGCTCAAGAACGCCTATGAGGAGTCTCTGGACAACCTGGAGACCCTCAAGAGGGAGAACAAGAACCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'30-40,'30-38,41-40=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.322 A=0.632 C2=0.306
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(28.9=93.2),PF0157614=Myosin_tail_1=PU(47.8=55.9)
A:
PF0157614=Myosin_tail_1=FE(3.2=100),PF041569=IncA=PU(2.1=15.8)
C2:
PF0157614=Myosin_tail_1=FE(14.0=100),PF041569=IncA=FE(55.6=100),PF045827=Reo_sigmaC=FE(67.5=100),PF0003816=Filament=FE(59.0=100),PF131661=AAA_13=PU(11.5=28.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTGCAGGCTGAGGAAGA
R:
CTGTCAAAGTTGCGCTGCTTC
Band lengths:
147-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]