MmuEX0030376 @ mm10
Exon Skipping
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155630681-155631603:+
Coord C1 exon
chr2:155630681-155630877
Coord A exon
chr2:155631011-155631360
Coord C2 exon
chr2:155631479-155631603
Length
350 bp
Sequences
Splice sites
3' ss Seq
CTGCCTGGTCTGCGGTCCAGGAA
3' ss Score
5.83
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
Exon sequences
Seq C1 exon
GCCAAGGGTGCGCTGGCTCATGCAGTGCAGGCCCTGCGGCACGACTGCGACCTCCTCCGAGAGCAGCACGAGGAAGAGTCTGAGGCTCAGGCTGAGCTGCAGCGGCTGCTGTCCAAAGCCAACGCGGAGGTGGCCCAGTGGCGGAGCAAGTATGAAGCAGATGCCATCCAAAGGACGGAGGAGCTGGAGGAGGCCAA
Seq A exon
GAAGAAGCTGGCCCTGCGGCTGCAAGAGGCAGAAGAAGGCGTAGAGGCCGCAAATGCCAAATGCTCCTCACTGGAGAAGGCCAAGCTGCGGCTGCAGACAGAGTCGGAGGATGTGACCTTGGAGCTGGAGCGGGCCACCTCGGCCGCCGCAGCCCTGGATAAGAAGCAGCGGCACTTGGAGCGGGCGCTGGAGGAGCGGAGGCGGCAGGAGGAGGAGATGCAGCGGGAACTCGAGGCGGCACAGAGGGAGGCTCGAGGTCTGGGGACAGAGCTCTTTCGACTGCGACATAGCCACGAGGAAGCGCTTGAGGCTCTGGAGACACTCAAGCGGGAGAACAAGAATCTGCAGG
Seq C2 exon
AGGAGATCAGTGACCTTACAGACCAGGTCAGCCTCAGCGGGAAGAGCATCCAGGAACTGGAGAAGGCCAAGAAGGCGCTGGAAGGGGAGAAGAGTGAGCTGCAAGCTGCACTGGAGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-'39-36,'39-35,40-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=0.669 C2=0.690
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(28.9=100)
A:
PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=PD(41.3=78.8),PF045827=Reo_sigmaC=PU(68.2=87.3)
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=FE(27.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGTGCGCTGGCTCAT
R:
CTCAGCCTCCTCCAGTGCAG
Band lengths:
319-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types