BtaEX6066254 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64909074-64910020:+
Coord C1 exon
chr13:64909074-64909270
Coord A exon
chr13:64909377-64909726
Coord C2 exon
chr13:64909896-64910020
Length
350 bp
Sequences
Splice sites
3' ss Seq
CATCTGTTCCCGGGGCCCAGAAA
3' ss Score
3.27
5' ss Seq
AGGGTACGG
5' ss Score
7.86
Exon sequences
Seq C1 exon
GCCAAGAGCGCGCTGGCTCATGCAGTGCAGGCTCTGCGGCATGACTGTGACCTCCTGAGGGAGCAGCATGAGGAGGAGGCTGAGGCCCAGGCCGAGCTGCAGAGGCTGCTGTCCAAGGCCAATGCCGAGGTGGCCCAGTGGAGGAGCAAGTACGAGGCAGATGCCATCCAGAGGACCGAGGAACTGGAGGAGGCCAA
Seq A exon
AAAGAAGCTGGCGCTGCGACTGCAGGAGGCAGAGGAGGGGGTTGAGGCCGCTCACGCCAAGTGCTCGTCGCTGGAGAAGGCCAAGCTGCGGCTGCAGACCGAGTCAGAGGACGTGACCCTGGAGCTGGAGCGGGCAACCTCTGCGGCCGCGGCGCTGGACAAGAAGCAGCGGCACTTGGAGCGGGCGCTGGAGGAGCGGCGGCGGCAGGAGGAGGAGATGCAGCGGGAGCTGGAGGCGGCCCAGAGGGAGGCCCGCAGCCTGGGCACTGAGCTCTTCCGGCTGCGGCACAGCCATGAGGAGGCCCTGGAGGCCCTGGAGACGCTCAGGCGGGAGAACAAGAACCTGCAGG
Seq C2 exon
AAGAGATCAGTGACCTCACAGACCAGGTCGGCCTCAGTGGGAAGAGCGTCCAGGAGCTGGAGAAAGCCAAGAAGGCGCTGGAAGGGGAGAAGAGCGAGCTCCAGGCAGCGCTGGAGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512-'43-43,'43-41,44-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.678 C2=0.952
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(23.7=100)
A:
PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=PD(33.9=78.8),PF045827=Reo_sigmaC=PU(74.3=88.1)
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(25.0=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCGCGCTGGCTCAT
R:
CTCAGCCTCCTCCAGCGC
Band lengths:
319-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]