GgaEX7008949 @ galGal4
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2945414-2946661:-
Coord C1 exon
chr20:2946465-2946661
Coord A exon
chr20:2945948-2946297
Coord C2 exon
chr20:2945414-2945538
Length
350 bp
Sequences
Splice sites
3' ss Seq
CTCCTTGCTGCTGTCTGCAGGAA
3' ss Score
9.92
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
Exon sequences
Seq C1 exon
AGCAAGAACGCCCTGGCACATGCCCTGCAAGCTTCTCGCCATGACTGCGACCTGCTGCGGGAGCAGTATGAGGAGGAGGTGGAGGCCAAGAGTGAGCTCCAGAGGAACTTGTCCAAGGCCAATGCCGAGGTGGCCCAGTGGAGAACCAAATACGAAACAGATGCTATCCAGAGAACAGAGGAGCTGGAGGAAGCCAA
Seq A exon
GAAGAAGCTGGCCATTCGGCTGCAGGAAGCGGAAGAGGCTGTGGAGGCTGCCCATGCCAAGTGCTCCTCACTGGAGAAGACCAAGCACAGGCTGCAGACAGAGATCGAGGACCTCTCAGTGGACCTGGAGAGAGCCAACTCTGCCTGTGCTGCCCTGGACAAGAAGCAGCGCAACTTTGACAGGATCCTGGCTGAGTGGAAGCAGAAGTATGAGGAAACTCAGGCAGAGCTGGAGGCATCACAGAAAGAGTCACGCAGCCTGAGCACGGAACTCTTCAAGCTCAAGAACGCCTATGAGGAGTCTCTGGACAACCTGGAGACCCTCAAGAGGGAGAACAAGAACCTGCAGG
Seq C2 exon
AGGAGATTGCTGATCTGACTGACCAGATAAGCATGAGCGGCAAAACCATCCATGAGCTGGAAAAGCTGAAGAAAGCCCTGGAGAATGAGAAGAGCGATATCCAGGCAGCGCTGGAGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'35-34,'35-32,36-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.246 C2=0.571
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(29.0=100)
A:
PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=PD(40.2=76.3),PF045827=Reo_sigmaC=PU(76.6=89.0)
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(22.6=73.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACGCCCTGGCACATG
R:
CTCAGCCTCCTCCAGCGC
Band lengths:
319-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]