DreEX6091855 @ danRer10
Exon Skipping
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24952598-24955584:-
Coord C1 exon
chr11:24955388-24955584
Coord A exon
chr11:24953015-24953364
Coord C2 exon
chr11:24952598-24952722
Length
350 bp
Sequences
Splice sites
3' ss Seq
TAAATTGTTTAACTCATCAGGAA
3' ss Score
4.73
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TCAAAGAATGCTTTGACTCATGCCCTACAATCCTCCAGACATGACTGTGATCTGCTGAGAGAGCAATATGACGAAGAACAAGAGGGTAAATCTGAGCTTCAGCGCGCACTGTCCAAAGCTAATGCTGAGGTTGCCCAGTGGAGGACCAAATATGAGACAGACGCCATTCAGAAGACAGAGGAACTCGAAGAAGCAAA
Seq A exon
GAAGAAGTTGGCCACACGCCTCCAAGAGTCTGAGGAACAAGTTGAAGCCTCAAACGCCAAGTGTTCCTCATTAGAAAAGACCAAACATCGGCTGCAGTCTGAGATTGAGGATCTGGTATTAGATCTGGAGCGCTCGAACGCTGCCGCCACTGCACTGGACAAGAAGCAGAGGCAATTTGACAAGATTCTGGCTGAATGGAGGCATAAGTACGAGGAGTGCCAGTCTGAGCTGGAATCATCTCAGAAAGAGTCTCGTAATCTGAGCACGGAGCTGTTCAAACTCAAGAACTCATACGAGGAGGCTCTCGACCATCTGGAAAGCATCAAACGGGAGAGTAAAAATCTACAGG
Seq C2 exon
AGGAGATTTCCGACCTCAATGACCAGATTAGCCAGGGCGGCAAGACCATTCATGAGCTGGAGAAGATCAAGAAGGGCTTGGACTTGGAGAAGACGGAAATTCAAGCAGCTCTTGAGGAAGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075-'38-44,'38-42,41-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.712 A=0.424 C2=0.619
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF059116=DUF869=PD(13.7=31.8),PF0003816=Filament=PD(42.7=80.3)
A:
PF0157614=Myosin_tail_1=FE(13.6=100),PF045827=Reo_sigmaC=PU(71.7=83.9)
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(27.5=90.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGCTTTGACTCATGCCCT
R:
TTCAGCTTCCTCAAGAGCTGC
Band lengths:
318-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]