GgaEX6025891 @ galGal3
Exon Skipping
Gene
ENSGALG00000007340 | F1NC10_CHICK
Description
NA
Coordinates
chr24:5617475-5618171:-
Coord C1 exon
chr24:5618006-5618171
Coord A exon
chr24:5617737-5617912
Coord C2 exon
chr24:5617475-5617573
Length
176 bp
Sequences
Splice sites
3' ss Seq
GAGCACTTCTGTCCCCTCAGCTA
3' ss Score
5.65
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CCTGCGGGCAGCAAACGGCACCGGGGGGCCGCGTGGTGGGGGGCGTGGATGCTGCCCCGGGGCGCTGGCCATGGCAGGTGAGTGTCCGCCACGGCTCCCGGCACCGCTGCGGTGGCTCCGTGCTGGCACCGCGCTGGATCGTCACCGCCGCCCATTGCGTGCACAG
Seq A exon
CTACCGGTGGCGGAGAGCACTGGGCTGGACGGTTCGTGCTGGCGTCACTCGTGGCTCGGCCGAGCAGGAGGTCGGGGTGCCGGTGGAGAGAGTTATTTCTCACCCGCTGTACAATGATAACAGCATGGATTATGACATTGCTCTGATGAAGCTGCGGGTTCCCTTGAATTTCTCAG
Seq C2 exon
ACACCATTGGAGCGCTGTGCCTGCTGCCCTCCCACCAGGACCTGCTCCCGGGCACGCCGTGCTGGGTGTCGGGCTGGGGCTACACCGGGCCTGACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007340-'5-6,'5-5,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.3=8.9),PF0008921=Trypsin=PU(23.8=78.6)
A:
PF0008921=Trypsin=FE(31.9=100)
C2:
PF0008921=Trypsin=FE(17.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGGCAGGTGAGTGTC
R:
TTGGTCAGGCCCGGTGTAG
Band lengths:
197-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]