MmuEX0048173 @ mm10
Exon Skipping
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:49112188-49114592:+
Coord C1 exon
chr9:49112188-49112350
Coord A exon
chr9:49113241-49113302
Coord C2 exon
chr9:49114494-49114592
Length
62 bp
Sequences
Splice sites
3' ss Seq
ATTCCCCACCCTTTGTACAGTGC
3' ss Score
6.86
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGTGTGGGGCAAGGCCTCTGGCTTCTCGAATAGTTGGCGGCCAAGCTGTGGCTTCTGGGCGCTGGCCATGGCAAGCTAGCGTGATGCTTGGCTCCCGGCACACGTGTGGGGCCTCTGTGTTGGCACCACACTGGGTAGTGACTGCTGCCCACTGCATGTACAG
Seq A exon
TGCCCAGAACCATGACTATGATGTGGCTCTGCTGCAGCTCCGGACACCAATCAACTTCTCAG
Seq C2 exon
ACACCGTGGGCGCTGTGTGCTTGCCGGCCAAGGAGCAGCACTTTCCATGGGGGTCGCAGTGCTGGGTGTCTGGCTGGGGCCACACCGACCCCAGCCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268-'11-21,'11-20,12-21
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
A:
PF0008921=Trypsin=FE(26.0=100)
C2:
PF0008921=Trypsin=FE(14.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGCAAGCTAGCGTGATG
R:
ATGGAAAGTGCTGCTCCTTGG
Band lengths:
146-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types