BtaEX6058164 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24580270-24583494:-
Coord C1 exon
chr15:24583332-24583494
Coord A exon
chr15:24582163-24582341
Coord C2 exon
chr15:24580270-24580368
Length
179 bp
Sequences
Splice sites
3' ss Seq
AGCGCGGCCTCTGTGTGCAGTTT
3' ss Score
6.23
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGTGTGGGGCCAGACCCCTGGCTTCCCGGATCGTGGGCGGGCAGGCAGCAGCTCCTGGGCGCTGGCCCTGGCAGGCCAGTGTGACCCTGGGCTCCCGGCACACATGTGGGGCCTCTGTTCTGGGCCCGCGCTGGGTGGTGACCGCGGCGCACTGCACGCACAG
Seq A exon
TTTCAGGCTGTCCCGCCTGTCCAGCTGGCGGGTCCATGCGGGGCTGGTCAGCCACAGCACGGTCAGGCCACACCAGGGGGCTGTGGTACAGCGGATCATCACCCACCCTCTGTACAGCGCCCAGAACCATGACTATGACGTGGCCCTCCTGCAGCTCCGCACCCCACTGCACTTCTCAG
Seq C2 exon
ACACCGTGGGCGCCGTGTGCCTGCCGGCTGAAGAGCGGGATTTTCCGAGGGGCTCGGAGTGCTGGGTGTCTGGCTGGGGCCACACTGACCCCGGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650-'8-11,'8-9,9-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.1=9.1),PF0008921=Trypsin=PU(19.0=80.0)
A:
PF0008921=Trypsin=FE(26.0=100)
C2:
PF0008921=Trypsin=FE(14.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCCCTGGCTTCCCG
R:
AGCCAGACACCCAGCACTC
Band lengths:
228-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]