GgaEX6026621 @ galGal4
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1737051-1737763:-
Coord C1 exon
chr26:1737670-1737763
Coord A exon
chr26:1737310-1737404
Coord C2 exon
chr26:1737051-1737231
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTCCCCTAATCCAGGCC
3' ss Score
8.18
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTTCCCAGACCAGGAGGTGAGGAGGACGGCCGTGCAGTGGATCGACTCCATCTCTGACACGGAGCTGCTGGACTACCTGCCCCAGCTGGTCCAG
Seq A exon
GCCTTGAAGTATGAGTGCTACCTGGACAGCCCACTGGTGCGCTTCCTCATGAAGCGAGCAATCTGCGACCTGAAAATCACCCACTATTTCTTCTG
Seq C2 exon
GCTGCTGAAGGATGGCCTGAAGGACTCCCAGTTCAGCATCCGCTACCAGTACCTGTTGGCAGCTCTGCTGTGCTGCTGTGGGAAGGGGCTGCGGGAGGAGTTTGACCGGCAGTGCCTGCTGGTCAACACGTTGGCCAGGCTGGCCCAGCAAGTGAGGGACGCCGCGCCATCCGCACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
PF0061315=PI3Ka=FE(16.9=100)
C2:
PF0061315=PI3Ka=PD(19.1=57.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACTCCATCTCTGACACGG
R:
CACTGCCGGTCAAACTCCTC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]