HsaEX6036226 @ hg38
Exon Skipping
Gene
ENSG00000133056 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr1:204443417-204444424:-
Coord C1 exon
chr1:204444331-204444424
Coord A exon
chr1:204444068-204444162
Coord C2 exon
chr1:204443417-204443597
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTTTCTCCGAAACAGGCC
3' ss Score
9.94
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
CTTCCCGGACCAGGAGGTGCGTCGTATGGCTGTGCAGTGGATTGGCTCACTCTCAGATGCTGAGCTGCTAGACTACCTGCCCCAGCTGGTACAG
Seq A exon
GCCCTGAAGTATGAATGCTACCTGGACAGCCCGTTGGTGCGCTTCCTCCTGAAACGAGCTGTGTCTGACTTGAGAGTGACTCACTACTTCTTCTG
Seq C2 exon
GTTACTGAAGGACGGCCTCAAGGACTCTCAGTTCAGCATCCGCTACCAGTATCTGCTGGCAGCCTTACTGTGCTGCTGTGGCAAGGGGCTGAGAGAAGAGTTTAACCGCCAGTGCTGGCTTGTCAATGCCCTGGCCAAACTGGCCCAGCAGGTCCGGGAGGCAGCCCCATCTGCAAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056-'49-49,'49-48,51-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
PF0061315=PI3Ka=FE(16.9=100)
C2:
PF0061315=PI3Ka=PD(19.1=57.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATGGCTGTGCAGTGGATT
R:
ACTCTTCTCTCAGCCCCTTGC
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains