RnoEX6044088 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49893189-49894085:+
Coord C1 exon
chr13:49893189-49893282
Coord A exon
chr13:49893404-49893498
Coord C2 exon
chr13:49893905-49894085
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTTTCTTCTGGACAGGCC
3' ss Score
9
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
CTTCCCGGACCAGGAGGTGCGGCGCATGGCCGTGCAGTGGATCGGCTCCCTCTCGGATGCTGAGCTGTTGGACTACCTGCCCCAGCTAGTACAG
Seq A exon
GCCCTGAAGTACGAGTGCTACCTGGATAGCCCCTTGGTGCGCTTTCTCCTGAAGCGAGCCATCTCCGACCTGCGAGTGACCCACTACTTTTTCTG
Seq C2 exon
GTTACTGAAGGACAGCCTCAAGGACTCCCAGTTCAGCATCCGTTACCAATACCTGCTAGCGGCCCTGCTGTGCTGCTGTGGCAAGGGACTGAGGGAGGAGTTTAACCGCCAGTGCTGGCTTGTCAATACCCTGGCCAAACTGGCCCAGCAGGTCCGAGAGGCCACCCCATCTGCACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-'30-27,'30-26,31-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
PF0061315=PI3Ka=FE(16.9=100)
C2:
PF0061315=PI3Ka=PD(19.1=57.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCGGATGCTGAGCTGTTG
R:
TTGGCCAGGGTATTGACAAGC
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]