GgaEX6027249 @ galGal4
Exon Skipping
Gene
ENSGALG00000000379 | ITGB3
Description
integrin beta-3 precursor [Source:RefSeq peptide;Acc:NP_989646]
Coordinates
chr27:2316312-2317046:+
Coord C1 exon
chr27:2316312-2316534
Coord A exon
chr27:2316704-2316804
Coord C2 exon
chr27:2316927-2317046
Length
101 bp
Sequences
Splice sites
3' ss Seq
ACTTCTCCCCTCTTCTTCAGGGA
3' ss Score
11.26
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GGCACGGGCAGTGCAGCTGCGGAGACTGCCTGTGTGACTCAGACTGGACTGGTGACTACTGCAACTGCACCACGCGCACAGACACCTGCATGTCCAGCAATGGGCTGGTGTGCAGTGGCCACGGCATCTGCGTCTGTGGCAAGTGTGACTGCATCCAGCCTGGCTCCTATGGGAACACCTGCGAGAAGTGTCCTACGTGCTCGGATGCCTGTACCATCAAAAA
Seq A exon
GGAATGCGTGGAGTGCAAGAAGTATGAGCGGGGCACGCTGGTGGAGCAGCAGTCCTGTGGCCGCGTGTGCCGTGATGAGATTGAGACAGTGCAGGAGCTGG
Seq C2 exon
GTGACAGGGGCAAGGATGCTGTGAACTGCACCTACAAGGATGAGAATGACTGCGTGGTGCGCTTCCAGTACTACGAGGACTCCAGTGGCAAATCCATCCTCTATGTCATAGAGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000379-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.7=5.3)
A:
PF079657=Integrin_B_tail=FE(40.0=100)
C2:
PF079657=Integrin_B_tail=FE(47.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGACTGGTGACTACTGCA
R:
GTAGTACTGGAAGCGCACCAC
Band lengths:
255-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]