MmuEX6090365 @ mm10
Exon Skipping
Gene
ENSMUSG00000020689 | Itgb3
Description
integrin beta 3 [Source:MGI Symbol;Acc:MGI:96612]
Coordinates
chr11:104658723-104662448:+
Coord C1 exon
chr11:104658723-104658945
Coord A exon
chr11:104660036-104660136
Coord C2 exon
chr11:104662329-104662448
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCCTCTCTCCTCTAGGGA
3' ss Score
13.21
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GCCATGGGCAATGTAACTGTGGGGACTGCGTGTGTGACTCGGACTGGACTGGCTACTACTGCAACTGTACTACACGCACTGACACCTGCATGTCCACCAATGGGCTGCTGTGCAGCGGCCGGGGCAACTGCGAGTGCGGCAGCTGTGTGTGCGTCCAGCCAGGCTCCTATGGAGACACCTGTGAGAAGTGCCCCACCTGCCCAGATGCCTGCTCCTTTAAGAA
Seq A exon
GGAGTGTGTGGAGTGTAAGAAGTTCAACCGGGGAACGCTCCATGAAGAAAACACCTGCAGCCGCTACTGCCGGGATGACATCGAGCAGGTGAAAGAGCTGA
Seq C2 exon
CGGATACTGGCAAAAACGCCGTGAATTGTACCTACAAGAACGAGGATGACTGTGTCGTCAGATTCCAGTACTACGAAGACACCAGTGGGAGGGCAGTCCTCTATGTGGTGGAAGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020689-'24-21,'24-20,31-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.462 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.7=5.3)
A:
PF079657=Integrin_B_tail=FE(40.0=100)
C2:
PF079657=Integrin_B_tail=FE(47.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCTGCATGTCCACCAAT
R:
TCCACCACATAGAGGACTGCC
Band lengths:
255-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types