BtaEX0018172 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009987 | INTB3
Description
Bos taurus integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) (ITGB3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206490]
Coordinates
chr19:47015140-47019412:+
Coord C1 exon
chr19:47015140-47015362
Coord A exon
chr19:47016631-47016731
Coord C2 exon
chr19:47019293-47019412
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCCCCTCTCTTTTAGGGA
3' ss Score
12.78
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GCCATGGCCAGTGCAGCTGTGGGGACTGTCTGTGTGACTCCGACTGGACCGGCTACTACTGCAACTGTACCACACGCACGGACACCTGCATGTCCAGCAACGGCTTGCTGTGCAGCGGACGGGGCAAGTGTGAGTGCGGCAGCTGTGTCTGCATCCAGCCGGGCTCCTATGGGGACACCTGTGAGAAGTGTCCCACCTGCCCTGACGCCTGCACCTTTAAGAA
Seq A exon
GGAGTGTGTGGAATGTAAGAAGTTTAACCGGGGAGCCCTCAACGAGGAAAATACCTGCAACCGTTATTGTCGTGATGAGATTGAGCCTGTGAAGGAACTTA
Seq C2 exon
AGGACACTGGCAAGGATGCTGTGAATTGTACCTACAAGAATGAGGATGACTGTGTTGTCAGATTCCAGTACTACGAAGACTCCAGTGGAAAGTCCATTTTGTATGTGGTGGAAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009987_MULTIEX1-5/7=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.7=5.3)
A:
PF079657=Integrin_B_tail=FE(40.0=100)
C2:
PF079657=Integrin_B_tail=FE(47.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGCAACTGTACCACACGC
R:
TTCCACTGGAGTCTTCGTAGT
Band lengths:
257-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development