BtaEX0018171 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009987 | INTB3
Description
Bos taurus integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) (ITGB3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206490]
Coordinates
chr19:47008343-47019412:+
Coord C1 exon
chr19:47008343-47008772
Coord A exon
chr19:47015140-47015362
Coord C2 exon
chr19:47019293-47019412
Length
223 bp
Sequences
Splice sites
3' ss Seq
CTTGGGCTGTGTGTTTTTAGGCC
3' ss Score
9.46
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GTGAGCTTCAGCATTGAGGCCAAAGTGCGTGGCTGTCCCCAGAAGAAGGAGAAGTCCTTCACCATCAAGCCTGTGGGCTTCAAAGACAGCCTCACCGTGCAGGTTACTTTCGACTGTGACTGTGCCTGCCAGGCCGAGGCTGAGCCTTTTAGCCACCGCTGCAACAATGGCAATGGGACCTTTGAGTGTGGGGTGTGCCGCTGTGGGCCCGGCTGGCTGGGGTCCCAGTGCGAGTGCTCAGAAGAGGACTACCGCCCCTCGCAGCAGGACGAGTGCAGCCCCCGGGAGGGCCAGCCCATCTGTAGCCAGCGGGGCGAGTGTCTCTGTGGCCAGTGCGTCTGCCACAGCAGTGACTTTGGCAAGATCACGGGCAAGTACTGTGAATGTGATGACTTCTCCTGTGTCCGCTACAAGGGGGAGATGTGCTCAG
Seq A exon
GCCATGGCCAGTGCAGCTGTGGGGACTGTCTGTGTGACTCCGACTGGACCGGCTACTACTGCAACTGTACCACACGCACGGACACCTGCATGTCCAGCAACGGCTTGCTGTGCAGCGGACGGGGCAAGTGTGAGTGCGGCAGCTGTGTCTGCATCCAGCCGGGCTCCTATGGGGACACCTGTGAGAAGTGTCCCACCTGCCCTGACGCCTGCACCTTTAAGAA
Seq C2 exon
AGGACACTGGCAAGGATGCTGTGAATTGTACCTACAAGAATGAGGATGACTGTGTTGTCAGATTCCAGTACTACGAAGACTCCAGTGGAAAGTCCATTTTGTATGTGGTGGAAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009987_MULTIEX1-4/7=3-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.4=27.8),PF079748=EGF_2=WD(100=25.0),PF079748=EGF_2=PU(32.3=6.9)
A:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.7=5.3)
C2:
PF079657=Integrin_B_tail=FE(47.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCGAGTGCTCAGAAGAG
R:
GGACTTTCCACTGGAGTCTTCG
Band lengths:
300-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development