GgaEX1030770 @ galGal4
Exon Skipping
Gene
ENSGALG00000000379 | ITGB3
Description
integrin beta-3 precursor [Source:RefSeq peptide;Acc:NP_989646]
Coordinates
chr27:2314382-2316804:+
Coord C1 exon
chr27:2314382-2314811
Coord A exon
chr27:2316312-2316534
Coord C2 exon
chr27:2316704-2316804
Length
223 bp
Sequences
Splice sites
3' ss Seq
GTCCTGCTGGCTGTCCCCAGGGC
3' ss Score
10
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTGAGCTTCAGCATCGAGGCCAAGGTGCGAGGCTGCCCACAGGAGCGTCAGAAATCCTTCACCATCAAACCTGTGGGCTTCAAGGACAGCTTGACCGTGGTGGTGAACTTTGACTGCAACTGTTCCTGCGAGAGCCAGGCCGAGGCCAACAGCTCCTTCTGCAGCAAAGGCAATGGCAGCCTGGAGTGCGGGGTGTGCCGCTGCAACCCGGGGCGCCTGGGCTCACACTGCGAGTGCTCAGAGGAGGAGTACAACCCCTCAGAGCAGGACAACTGCAGCCCACAGCCAGGACAGCCCCTCTGCAGCCAGCGTGGCGAGTGCATCTGTGGGCAGTGCGTGTGCCATGGCAGTGACTTTGGCAAGGTGACGGGCAAGTACTGCGAGTGCGACGACTTCTCCTGTGTCCGCTTCAAAGGCCAGATGTGCTCAG
Seq A exon
GGCACGGGCAGTGCAGCTGCGGAGACTGCCTGTGTGACTCAGACTGGACTGGTGACTACTGCAACTGCACCACGCGCACAGACACCTGCATGTCCAGCAATGGGCTGGTGTGCAGTGGCCACGGCATCTGCGTCTGTGGCAAGTGTGACTGCATCCAGCCTGGCTCCTATGGGAACACCTGCGAGAAGTGTCCTACGTGCTCGGATGCCTGTACCATCAAAAA
Seq C2 exon
GGAATGCGTGGAGTGCAAGAAGTATGAGCGGGGCACGCTGGTGGAGCAGCAGTCCTGTGGCCGCGTGTGCCGTGATGAGATTGAGACAGTGCAGGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000379_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.5=27.8),PF079748=EGF_2=WD(100=25.0),PF079748=EGF_2=PU(32.3=6.9)
A:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.7=5.3)
C2:
PF079657=Integrin_B_tail=FE(40.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTCCTTCTGCAGCAAAG
R:
ACTTCTTGCACTCCACGCATT
Band lengths:
305-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]