GgaEX1030770 @ galGal3
Exon Skipping
Gene
ENSGALG00000000379 | F1NS08_CHICK
Description
NA
Coordinates
chr27:2219770-2222192:+
Coord C1 exon
chr27:2219770-2220199
Coord A exon
chr27:2221700-2221922
Coord C2 exon
chr27:2222092-2222192
Length
223 bp
Sequences
Splice sites
3' ss Seq
GTCCTGCTGGCTGTCCCCAGGGC
3' ss Score
10
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTGAGCTTCAGCATCGAGGCCAAGGTGCGAGGCTGCCCACAGGAGCGTCAGAAATCCTTCACCATCAAACCTGTGGGCTTCAAGGACAGCTTGACCGTGGTGGTGAACTTTGACTGCAACTGTTCCTGCGAGAGCCAGGCCGAGGCCAACAGCTCCTTCTGCAGCAAAGGCAATGGCAGCCTGGAGTGCGGGGTGTGCCGCTGCAACCCGGGGCGCCTGGGCTCACACTGCGAGTGCTCAGAGGAGGAGTACAACCCCTCAGAGCAGGACAACTGCAGCCCACAGCCAGGACAGCCCCTCTGCAGCCAGCGTGGCGAGTGCATCTGTGGGCAGTGCGTGTGCCATGGCAGTGACTTTGGCAAGGTGACGGGCAAGTACTGCGAGTGCGACGACTTCTCCTGTGTCCGCTTCAAAGGCCAGATGTGCTCAG
Seq A exon
GGCACGGGCAGTGCAGCTGCGGAGACTGCCTGTGTGACTCAGACTGGACTGGTGACTACTGCAACTGCACCACGCGCACAGACACCTGCATGTCCAGCAATGGGCTGGTGTGCAGTGGCCACGGCATCTGCGTCTGTGGCAAGTGTGACTGCATCCAGCCTGGCTCCTATGGGAACACCTGCGAGAAGTGTCCTACGTGCTCGGATGCCTGTACCATCAAAAA
Seq C2 exon
GGAATGCGTGGAGTGCAAGAAGTATGAGCGGGGCACGCTGGTGGAGCAGCAGTCCTGTGGCCGCGTGTGCCGTGATGAGATTGAGACAGTGCAGGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000379-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.5=27.8),PF079748=EGF_2=WD(100=25.0),PF079748=EGF_2=PU(32.3=6.9)
A:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.7=5.3)
C2:
PF079657=Integrin_B_tail=FE(40.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTCCTTCTGCAGCAAAG
R:
ACTTCTTGCACTCCACGCATT
Band lengths:
305-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]