DreEX0040162 @ danRer10
Exon Skipping
Gene
ENSDARG00000045070 | itgb3b
Description
integrin beta 3b [Source:ZFIN;Acc:ZDB-GENE-071207-2]
Coordinates
chr12:26357652-26367557:+
Coord C1 exon
chr12:26357652-26358078
Coord A exon
chr12:26366217-26366439
Coord C2 exon
chr12:26367457-26367557
Length
223 bp
Sequences
Splice sites
3' ss Seq
CCCTTAATGGCTCACTCCAGGTC
3' ss Score
7.26
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GTGTCCTTCAGTGTTGAAGCCCGAGCCAGAGGCTGTCCGAAGGAGAAGCGCAAAACCTTCACTATAAAACCAGTGGGCTTCAAAGACACCTTGCAGATCACAGTCAACTTTGAATGTGAGTGTAAATGCCAAGCAAAGGCTGAGCTTGAGAGTCCCGTCTGCCACCACGGCAATGGCACCTATGAGTGTGGCATCTGCCTGTGTCACCCGGGGCGGCTGGGTCCCCGCTGCGAATGTGCAGAGGGCGACTACAGCCCAACAGAACAGGACGCCTGCAGTGGGCCAGACAAGGTGATCTGCAGCGGCCGGGGAGACTGTGTGTGCGGACAGTGCGTCTGTCACAATAATGACTTCGGCAAAGTATGGGGGAAGAGATGCGAGTGTGATGATTTCAGCTGCCTGCGCTATAAAGGAGAGCTCTGCTCAG
Seq A exon
GTCATGGCACTTGTTACTGTGGGTTTTGTCAGTGTGATCCGGACTGGAAAGGGGAAAACTGCAACTGTTCCACTCGAACAGACACCTGTATGTCCAGCTTGGGTCTGCTGTGCAGCGGTCGGGGTCAGTGTGTGTGTGGCAGCTGTGAATGTACTCAACCAGGTGCTTATGGATCTACCTGCGACAAATGTCCCACCTGCCCTGACGCCTGCACACTGAAGAA
Seq C2 exon
GGAGTGTGTAGAGTGTAAGCACTTCAAGAGAGGGAAACTCTTCGATGATGATTCCTGCACTCGCATCTGCAGAGATGAAATCAGACTAGTGGATGATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045070-'13-12,'13-11,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.4=28.0),PF079748=EGF_2=WD(100=24.5),PF079748=EGF_2=PU(32.3=7.0)
A:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.7=5.3)
C2:
PF079657=Integrin_B_tail=FE(40.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCTATGAGTGTGGCATC
R:
AGTTTCCCTCTCTTGAAGTGCT
Band lengths:
292-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]