GgaEX6029592 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30720138-30725320:-
Coord C1 exon
chr3:30725186-30725320
Coord A exon
chr3:30722546-30722630
Coord C2 exon
chr3:30720138-30720286
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTTCAATCTTAATTTAACAGTTT
3' ss Score
5.69
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GCTCGATTCAGAGAAGCAAGAGAAAACCGAAGAACAAAAATTGATGCTTTGTATAAATACGTATTTGAAGTTCTAAGCATCAGGCTAGGTTTAGATTTACCAACTGTGGAGGAATTGATTTTGGATGTCCCCTCG
Seq A exon
TTTGAGGCATTTGATTCATTTTTTGCCAAGGGAGGAAGTAAAGCATTGAAAATTTTCTATCAAGAAGGAGACGTACCAGGAATAG
Seq C2 exon
AATGTGGTCGGACAATTCCAGGAGTTGCAAAAGGAAGTAAAATGATGCGATTTTATGTGGACAACATACCAGACAAATTTGTAGGACTATGCTTATTTTTTGTTCGTCTTAAGAATGACAGTCATATAAAGGCAAAAAGTATACATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGATTCAGAGAAGCAAGAGA
R:
ACTTCCTTTTGCAACTCCTGGA
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]