HsaEX0020219 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38691113-38702401:+
Coord C1 exon
chr6:38691113-38691247
Coord A exon
chr6:38697678-38697762
Coord C2 exon
chr6:38702250-38702401
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTTTATTTAACAGCTG
3' ss Score
10.39
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GCAAGATTTAGAGAGGCAAGGGAAAGCCGAAGACTGAAAATTGACCCTTCATACAAATATATATTTGAAATTCTAGCAGAAAATCTTGGCCTGGACATAGTAACTGTTGAAGAATTAATTTTGGATTGCCCATCT
Seq A exon
CTGGAAGCATTTACTAATTTTTTTGCGAAAGATGGTTGTAAGACACTGAAATTTTTGTACCAAGAAGGAGATGTACCTGGTATTG
Seq C2 exon
AATGTGGTCGAACTATTGCTGGAGCAACTAAAGGGGCAAAAATGATGAAATTGTATATAGACAATGCAGCCCCGGATAAACTAAAAGGACTGTGCATATTTTTTGTTCGTTGCCGTAATGATGTTGCTATAAATGTTAAAACTATTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721_MULTIEX1-2/3=1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGATTTAGAGAGGCAAGGGA
R:
TTGCCCCTTTAGTTGCTCCAG
Band lengths:
174-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)