HsaEX0020218 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38690898-38705032:+
Coord C1 exon
chr6:38690898-38690975
Coord A exon
chr6:38691113-38691247
Coord C2 exon
chr6:38704843-38705032
Length
135 bp
Sequences
Splice sites
3' ss Seq
ACTTGGTTTTCATTCCTTAGGCA
3' ss Score
8.77
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
TCTTCCCGGAGGTCCTCCAGATACCGCCGGAGTATGAGTGGCCTTCCCAATCTACAGGAAACATTAAAAGAGAGACAG
Seq A exon
GCAAGATTTAGAGAGGCAAGGGAAAGCCGAAGACTGAAAATTGACCCTTCATACAAATATATATTTGAAATTCTAGCAGAAAATCTTGGCCTGGACATAGTAACTGTTGAAGAATTAATTTTGGATTGCCCATCT
Seq C2 exon
GAAGCGCTCTTTACTGTTCTGGATGCGTCGAAAGGACTCTTAAATGGAATTAGGGATATGTTGGCAAATATATTTCTACCAGCTGTTCTTGCAACAAACAACTGGGGTGCTTTAAACCAGTCCAAGCAGGGAGAATCTGAAAAACATATTTTCACTGAAACCATCAACAGATATCTTTCATTTTTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=0.052 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGATACCGCCGGAGTAT
R:
AAAGATATCTGTTGATGGTTTCAGTG
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)