MmuEX0015096 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30772266-30780285:+
Coord C1 exon
chr17:30772266-30772778
Coord A exon
chr17:30772887-30773021
Coord C2 exon
chr17:30780201-30780285
Length
135 bp
Sequences
Splice sites
3' ss Seq
TATGTTTTCACTTCTTTTAGGCA
3' ss Score
9.55
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
AGCTCTTCTGCTGAAGAAAACTACACTGAGAAATGGAGTCTGAGGAAGGCAACGCAGAGCCACCCCCTCCGAGTGAAGAGGCTCCTCCTCCAGTTGTAGAGGAAGCTCCGCCCCCTCTCCCTCCAGAAGACACTGCCCCTCCCCCTCCCGAGGAGCAGGCCCCGCCCCCTGAGGGGGATGCTGCCCCGCCCCCCACAGGAGATGCCTTCCAACTCACTGTGGAAGGAGAAGCTCCGCACCCCGAGGATCCCAAGCTCCTGTCTGAGCAGGGTCCTGCTACTTCCGTGACTGACTATAGGAGTCTGATTCCCTCAGATGAGGAGGTAACACTGCCGGAGGATGAGGAGTCTGGCCAGGCCAGGGTCCGGGCGAGGCACACCCCTAGGCCTGCACAGTCGGTGCTGTCAGACGGGATTTCGCAGTCTTCCCGGCGGCCCTCTAAGTTCCGCCGAAGTATGACTGGCATCCCAAACCTCCAGGAGACCCTCAAAGAGAAACAG
Seq A exon
GCAAGATTTAGAGAAGCAAGGGAAAACCGGAAAATGAAAATTGGCCCCTCGCATAAATACATATTTGAAGTTCTAGGAGAAAAGCTTGGGTTGGACTTAGTAACTGTGGAAGAACTAATTTTGGATTGCCCGTCG
Seq C2 exon
CTGGATCCGTTCACCAGCTTTTTTGAGAAAGGTGGCTGTAAGACGCTGAAGTTTTTGTACCAGGAAGGAGAAGTGCCCGGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'4-2,'4-1,5-2
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.222 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGAGGAGTCTGGCCAG
R:
CAAAACCGGGCACTTCTCCTT
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: