BtaEX6097400 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014063 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr23:12550367-12554363:+
Coord C1 exon
chr23:12550367-12550819
Coord A exon
chr23:12550927-12551061
Coord C2 exon
chr23:12554279-12554363
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTGTGGCTTTCATTCTTTAGGCA
3' ss Score
9.53
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATGAGCGCTGAGGAAGGCGACCCACCCCCTCCGGAAGAAGAAGCCCCTCCCTCGTCCGGAGAATCAGCGCCTCCTGGTTCAGAAGAGGTTGCCCGTCCAGATCCAGGAGATGAGGCTCCGCCCCCTGCAGAAGAAGAGACTCCTCCTCCTCCTTCCAGCGAGGAGGCCCCAACCCTTCCCGAAGAGGTGTCTGAGGGAGATACAGGCTCTCTTTCCGAGAAAGCCCCTACTTCCTCTTTAAGTGATTATTTGAATCTCCTTCCTTCTGATGAAAGGATAGTTATGCCAGACGATGATGAGTTGGAACCAGGCAGGGTGCGACCCAGGCCTGCGCCGCGAATGGTCCAGTCAATGCTTTCTGATGTGCTCTCTCAGTCTTCCCACAGATCATCCAAATATCGCCGAAGTATGAGTGGCATTCCAAATCTACAGGAAACATTAAAAGAGAGACAG
Seq A exon
GCAAGATATAGAGATGCAAGAGAAAACCGAAAAATGAAAATAGACCCTTCCTACAAATATATATTTGAAATTCTGTCAGAAAAGCTTGGCCTGGACATGGTAACTGTTGAAGAATTAATTTTGGATTGCCCATCT
Seq C2 exon
CTGGAAGCATTTACTCTCTTTTTTATGAAAGACGGTTGCAAGACACTGAAATTTTTGTACCAAGAAGGAGATGTACCTGGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014063-'1-2,'1-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.138 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGACGATGATGAGTTGG
R:
ACCAGGTACATCTCCTTCTTGGT
Band lengths:
251-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]