RnoEX0028594 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9313271-9321952:+
Coord C1 exon
chr20:9313271-9313720
Coord A exon
chr20:9313908-9313966
Coord C2 exon
chr20:9321868-9321952
Length
59 bp
Sequences
Splice sites
3' ss Seq
ATACATATTTGAAATTCTAGGAG
3' ss Score
4.54
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
ATGGAGTCTGAGGAAGACAACACAGCCCCACCTCCTCTGAGTGAAGAGGAAGCTCCGCCCCCTCCCCCTTCAGAAGACACTGCCCCTCCCGCGGAGCAGGCCCCGCCCCCTGAGGATGGTGCCCCGCCCCCCACAGGAGATGGCGTCGAACCCAGTGCTGAAGGAGAAGCTCTGCAGGCTGAGGGCATAGACCCCGCGTCCCTGTCTGTGCAGGAGGATCCTGCTCTTAACATGACGGACTATAGGAGTCTGATTCCCTCAGATGAGGAGATAACAATGCCGCCGGAGGATGACGAGTCTGGCCAGGGCAGGGTCCGGGCGAGGCTCGCCCCTAGGCCTGTACAATCAGTGTTGTCCGATGGGCTTTCTCAGTCTTCCCGGCGGTCCTCCAAGTTCCGCCGAAGTATGACCGGCATTCCAAACCTCCAGGAGACCCTCAAAGAGAAACAG
Seq A exon
GAGAAAAGCTTGGACTGGATTTAGTATCTGTGGAAGAACTAATTTTGGATTGCCCATCG
Seq C2 exon
CTGGACGCCTTCTCCAGTTTTTTTGAGAAAGGCGGCTCTAAGACACTGAAGTTTTTGTACCAGGAAGGAGATGTGCCTGGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'0-3,'0-2,1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.189 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAGTATGACCGGCATTCC
R:
AACCAGGCACATCTCCTTCCT
Band lengths:
134-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]