GgaEX6029591 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30722546-30726154:-
Coord C1 exon
chr3:30726071-30726154
Coord A exon
chr3:30725186-30725320
Coord C2 exon
chr3:30722546-30722630
Length
135 bp
Sequences
Splice sites
3' ss Seq
AAAGATGTTTAATGTTTTAGGCT
3' ss Score
5.97
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ATTCCTGTACCCCGAAGGCTGTCTAGGCTTTATCGGAGCTCTGCTGGAGTTCTATCCATGCAAGAAATTTTAAAAGAAAAACAG
Seq A exon
GCTCGATTCAGAGAAGCAAGAGAAAACCGAAGAACAAAAATTGATGCTTTGTATAAATACGTATTTGAAGTTCTAAGCATCAGGCTAGGTTTAGATTTACCAACTGTGGAGGAATTGATTTTGGATGTCCCCTCG
Seq C2 exon
TTTGAGGCATTTGATTCATTTTTTGCCAAGGGAGGAAGTAAAGCATTGAAAATTTTCTATCAAGAAGGAGACGTACCAGGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCTAGGCTTTATCGGAGC
R:
TCCTGGTACGTCTCCTTCTTGA
Band lengths:
148-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]