MmuEX6076603 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30772887-30781653:+
Coord C1 exon
chr17:30772887-30773021
Coord A exon
chr17:30780201-30780285
Coord C2 exon
chr17:30781502-30781653
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCGTTCATTTAACAGCTG
3' ss Score
8.85
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCAAGATTTAGAGAAGCAAGGGAAAACCGGAAAATGAAAATTGGCCCCTCGCATAAATACATATTTGAAGTTCTAGGAGAAAAGCTTGGGTTGGACTTAGTAACTGTGGAAGAACTAATTTTGGATTGCCCGTCG
Seq A exon
CTGGATCCGTTCACCAGCTTTTTTGAGAAAGGTGGCTGTAAGACGCTGAAGTTTTTGTACCAGGAAGGAGAAGTGCCCGGTTTTG
Seq C2 exon
AATGTGGTCGAACGATTACGGGAGTCCCCAAAGGGGGGAAAATGATGAGGATTTATGTAGACAACGCAGCTCCGGACAAGCTGAAAGGGCTGTGCTTATTTTTCGTCCGTTGTCGTAATGATGTTGCCATAAATTCCAAAACCATTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'5-3,'5-2,6-3=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAATTGGCCCCTCGCAT
R:
CGGAGCTGCGTTGTCTACATA
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: