GgaEX6029608 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30701802-30704681:-
Coord C1 exon
chr3:30704601-30704681
Coord A exon
chr3:30703571-30703687
Coord C2 exon
chr3:30701802-30701921
Length
117 bp
Sequences
Splice sites
3' ss Seq
AATATGTTTTTTATGCTTAGATG
3' ss Score
5.79
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GGTCTTCTCCAATATTATGAAGATTTATGTCAAGACACACGAACTATTTTTCTTAATCTAATGGCACCAAAAATGCAAAAG
Seq A exon
ATGGAAGCTGTGCTGAGGCAAGGACTTACTTTGTTGACTTGGTCATCAGTTACACTGGACAGTTTCTTTCAAGAAGCTGATGAGGTTCTGTGTATGTTTAAACAGTTTTTGAAAAAG
Seq C2 exon
GTTAATGATATATGTGAAGTACGGATTGATTTAATATTAAAAGAAATATCAAATACTCTTTTAATTGTCTTACCAGTAGATGATCCTATCAAAGTAGACGATATGTTGACCTCTAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(4.6=100)
A:
PF083857=DHC_N1=PD(4.1=59.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAAGATTTATGTCAAGACACACG
R:
CTCATTAGAGGTCAACATATCGTCT
Band lengths:
186-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]