HsaEX6047069 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38757579-38759450:+
Coord C1 exon
chr6:38757579-38757659
Coord A exon
chr6:38758065-38758181
Coord C2 exon
chr6:38759331-38759450
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTACCGTTTCTAGGTG
3' ss Score
10.91
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGTCTTCTGCAATATTATGATGAGTTATGTCAGGAAGTGCCTTCTGTGTTTGTCAATCTGATGACCCCAAAAATGAAAAAG
Seq A exon
GTGGAATCTGTGTTGAGGCAAGGACTCACAGTGTTAACATGGTCGTCTTTAACACTGGAAAGCTTCTTTCAAGAAGTCGAATTAGTTTTGGATATGTTCAATCAACTTTTAAAGAAG
Seq C2 exon
ATCAGTGACTTGTGTGAAATGCATATTGATACAGTTCTGAAGGAGATAGCCAAAACTGTGTTGATTTCTCTGCCTGAAAGTGGTGCTACCAAAGTAGAAGATATGTTGACCCTCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(4.6=100)
A:
PF083857=DHC_N1=PD(4.1=59.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTCTGCAATATTATGATGAGT
R:
AGGGTCAACATATCTTCTACTTTGGT
Band lengths:
194-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)