RnoEX6062090 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9365718-9367049:+
Coord C1 exon
chr20:9365718-9365744
Coord A exon
chr20:9366195-9366311
Coord C2 exon
chr20:9366930-9367049
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTCTGCTCTCCCTAGGTG
3' ss Score
13.47
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AATCTGATGACCCCGAAGATGAAGAAG
Seq A exon
GTGGAGTCCGTCCTGAGGCAAGGGCTCACAGTACTGACCTGGTCCTCACTAATGCTGGAGAGCTTCTTCAAAGAGGTTGAGTCCGTTTTGGATATGTTCAACCAGCTTTTAAAGAAG
Seq C2 exon
GTCAATGACCTGTGTGAAATGCATATCGACACAGTTCTGAAGGAGATCGCCAAGACATTATTGATCTCCTTGTCGGACAGTGGCGCCACCAGAGTAGAGGACATGCTGACCCTCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'42-46,'42-45,43-46=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(1.4=100)
A:
PF083857=DHC_N1=PD(4.1=59.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGATGACCCCGAAGATGA
R:
CTCGTTGAGGGTCAGCATGTC
Band lengths:
146-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]